ChemicalBook--->CAS DataBase List--->115899-40-6

115899-40-6

115899-40-6 Structure

115899-40-6 Structure
IdentificationBack Directory
[Name]

TFA-ap-dU
[CAS]

115899-40-6
[Synonyms]

TFA-ap-dU
5-TFA-AP-DU
5-TFA-ap-dU 5-TFA-ap-dU
5-TFA-ap-2'-Deoxyuridine
Uridine, 2'-deoxy-5-[3-[(trifluoroacetyl)amino]-1-propynyl]-
2'-Deoxy-5-[3-[(2,2,2-trifluoroacetyl)aMino]-1-propyn-1-yl]uridine
Uridine, 2'-deoxy-5-[3-[(2,2,2-trifluoroacetyl)amino]-1-propyn-1-yl]-
[Molecular Formula]

C14H14F3N3O6
[MDL Number]

MFCD28134648
[MOL File]

115899-40-6.mol
[Molecular Weight]

377.27
Chemical PropertiesBack Directory
[Melting point ]

>116°C (dec.)
[density ]

1?+-.0.1 g/cm3(Predicted)
[storage temp. ]

2-8°C
[solubility ]

DMSO (Slightly), Methanol (Slightly)
[form ]

Solid
[pka]

8.17±0.10(Predicted)
[color ]

Pale Yellow to Light Orange
Safety DataBack Directory
[Symbol(GHS) ]

Exclamation Mark (GHS07)
GHS07
[Signal word ]

Warning
[Hazard statements ]

H302-H315-H319-H335
[Precautionary statements ]

P261-P280-P301+P312-P302+P352-P305+P351+P338
Hazard InformationBack Directory
[Uses]

2''-Deoxy-5-[3-[(2,2,2-trifluoroacetyl)amino]-1-propyn-1-yl]uridine is an intermediate in the synthesis of fluorescent labeling compounds of cyclooctyne-modified deoxyuridine triphosphates in DNA.
[Synthesis]

AcetaMide, 2,2,2-trifluoro-N-2-propynyl-

14719-21-2

Idoxuridine

54-42-2

TFA-ap-dU

115899-40-6

To a solution of 5-iodouridine (5.0 g, 14.1 mmol) in anhydrous DMF (40 mL), CuI (0.20 g, 1.05 mmol) and Pd(PPh3)4 (0.41 g, 0.35 mmol) were added under nitrogen protection. After stirring for 10 min, triethylamine (4.0 mL, 28.6 mmol) and 2,2,2-trifluoro-N-(prop-2-yn-1-yl)acetamide (5.4 g, 35.7 mmol) were added sequentially and the reaction mixture was stirred at room temperature overnight. Upon completion of the reaction, all volatiles were removed under vacuum and the residue was purified by rapid chromatography on silica gel [eluent: EtOAc/MeOH (0-15%)] to afford the target product 2,2,2-trifluoro-N-(3-(1-((2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-2,4-dioxo-1,2,3,4- (tetrahydropyrimidin-5-yl)prop-2-ynyl)acetamide as a yellow solid (4.1 g, 76% yield).1H-NMR (DMSO-d6) δ: 11.68 (br s, 1H, NH), 10.02 (s, 1H, NH), 7.94 (s, 1H, H-6), 6.11 (t, J = 7.2 Hz, H-1'), 5.29 (d, J = 0.4 Hz, NH), 6.11 (t, J = 0.4 Hz, NH), 5.29 (d, J = 0.4 Hz, NH). J = 0.4 Hz, 1H, OH), 4.21 (m, 3H, H-3', NCH2), 3.71-3.83 (m, 2H, CH2-5'), 2.15-2.19 (m, 1H, H-2'), 2.03-2.08 (m, 1H, H-2'). Mass Spectra (ESI): Calculated value C14H14F3N3O6 (M + Na)+ 400, measured value 400.

[References]

[1] Tetrahedron, 2009, vol. 65, # 4, p. 934 - 939
[2] Journal of the American Chemical Society, 2005, vol. 127, # 43, p. 15071 - 15082
[3] Helvetica Chimica Acta, 2007, vol. 90, # 6, p. 1082 - 1098
[4] Journal of the American Chemical Society, 2011, vol. 133, # 8, p. 2463 - 2480
[5] Helvetica Chimica Acta, 2008, vol. 91, # 1, p. 165 - 175
Spectrum DetailBack Directory
[Spectrum Detail]

TFA-ap-dU(115899-40-6)1HNMR
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