Heterocyclic Compounds

Heterocyclic compounds are a class of compounds that consist of carbon atoms and non-carbon atoms altogether forming a cyclic skeletal structure. These non-carbon atoms are collectively referred to as a heteroatom. The common heteroatoms include nitrogen, oxygen, and sulfur. Lactones, lactams, cyclic ethers that we’ve already learned are heterocyclic compounds. With similar properties of congeneric open-chain compounds, they will be discussed in corresponding chapters. This chapter will mainly discuss heterocyclic compounds with relatively stable ring system and with a certain degree of aromaticity, also known as aromatic heterocyclic compound.

There are many kinds and a large number of heterocyclic compounds widely distributed in nature. Many natural heterocyclic compounds in animals and plants play an important physiological role in the body. For example, heterocyclic structure exists in chlorophyll in plants, hemoglobin in animal blood, alkaloids and glycosides as the active ingredient in herbs, some antibiotics and vitamins, certain composition of amino acids in protein and bases in nucleotide. About half of the existing medicines have heterocyclic structures. Thus, heterocyclic compounds play an important role in organic compounds especially in organic medicines.

The most common and also the most important heterocyclic compounds are that with five-membered or six-membered heterocyclic ring and their fused heterocyclic compounds. Therefore, according to the size of the ring, heterocyclic compounds can be divided into five-membered compounds and six-membered heterocyclic compounds. E.g., furan, thiophene, pyrrole, imidazole, triazole and their fused heterocyclic compounds, indole, benzimidazole and diphenylene-oxide are all five-membered heterocyclic compounds, while pyridine, pyrimidine and their fused heterocyclic compounds, quinoline and quinazoline are all six-membered heterocyclic compounds.

According to the number of hetero atoms, five-membered compounds and six-membered heterocyclic compounds can be divided into one-hetero-atom-containing heterocyclic compounds and two-hetero-atom-containing and several-hetero-atom-containing heterocyclic compounds. E.g., furan, thiophene, pyridine, indole, quinoline, dibenzofuran, etc. are one-hetero-atom-containing heterocyclic compounds; imidazole, pyrimidine, benzimidazole, quinazoline, etc. are two-hetero-atom-containing heterocyclic compounds; purine, comprising more than two hetero atoms, is a several-hetero-atom-containing heterocyclic compound. According to the form of the ring in the molecule, heterocyclic compounds can be divided into single-heterocyclic compounds and fused heterocyclic compounds. E.g., furan, pyridine, pyrimidine, imidazole, etc. are single-heterocyclic compounds and indole, quinoline, dibenzofuran, purines, etc. are fused heterocyclic compounds.

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Structure Chemical Name CAS MF
1-tert-Butyl-1H-pyrazole 1-tert-Butyl-1H-pyrazole 15754-60-6 C7H12N2
1-(3-Methoxypropyl)-4-piperidinamine 1-(3-Methoxypropyl)-4-piperidinamine 179474-79-4 C9H20N2O
1-tert-butyl-3-phenyl-1H-pyrazole 1-tert-butyl-3-phenyl-1H-pyrazole 1269293-29-9 C13H16N2
1H-Pyrazolo[4,3-b]pyridine-6-carboxylicacid 1H-Pyrazolo[4,3-b]pyridine-6-carboxylicacid 1256807-59-6 C7H5N3O2
2-broMo-5-Methyl-oxazole 2-broMo-5-Methyl-oxazole 129053-67-4 C4H4BrNO
IMidazo[1,2-a]pyridin-8-aMine, 5-broMo- IMidazo[1,2-a]pyridin-8-aMine, 5-broMo- 1357947-00-2 C7H6BrN3
IMidazo[1,2-a]pyridine-2-carboxylic acid, 7-chloro- IMidazo[1,2-a]pyridine-2-carboxylic acid, 7-chloro- 1020038-42-9 C8H5ClN2O2
4-chloro-2-fluoro-5-iodopyridine 4-chloro-2-fluoro-5-iodopyridine 1184914-20-2 C5H2ClFIN
(S)-N-(Pyrrolidin-3-yl)acetaMide hydrochloride (S)-N-(Pyrrolidin-3-yl)acetaMide hydrochloride 1246277-44-0 C6H13ClN2O
3-fluoro-4-(4-Methyl-1H-iMidazol-1-yl)benzoic acid 3-fluoro-4-(4-Methyl-1H-iMidazol-1-yl)benzoic acid 1243205-04-0 C11H9FN2O2
3-(1-chloroH-pyrrolo[1,2-a]pyrazin-6-yl)cyclobutanone 3-(1-chloroH-pyrrolo[1,2-a]pyrazin-6-yl)cyclobutanone 936901-72-3 C10H8ClN3O
N-Cyclopropyl-3-oxetanamine N-Cyclopropyl-3-oxetanamine 1340518-89-9 C6H11NO
[2,2'-Bipyridine]-4,4'-dicarboxylic acid [2,2'-Bipyridine]-4,4'-dicarboxylic acid 117330-40-2 C16H16N2O4
8-BroMo-2,3-dihydro-[1,4]dioxino[2,3-b]pyridine 8-BroMo-2,3-dihydro-[1,4]dioxino[2,3-b]pyridine 643067-83-8 C7H6BrNO2
2-Ethyl-2-oxazoline 2-Ethyl-2-oxazoline 10431-98-8 C5H9NO
1-Methyl-5-(4,4,5,5-tetraMethyl-1,3,2-dioxaborolan-2-yl)-1H-benzo[d]iMidazol-2(3H)-one 1-Methyl-5-(4,4,5,5-tetraMethyl-1,3,2-dioxaborolan-2-yl)-1H-benzo[d]iMidazol-2(3H)-one 1187968-73-5 C14H19BN2O3
8-BroMo-3-iodo-iMidazo[1,2-a]pyridine 8-BroMo-3-iodo-iMidazo[1,2-a]pyridine 1232038-69-5 C7H4BrIN2
N-(4-Nitrophenyl)-4-(3-pyridyl)-2-pyriMidineaMine N-(4-Nitrophenyl)-4-(3-pyridyl)-2-pyriMidineaMine 181065-58-7 C15H11N5O2
1,1'-bis(4-cyanophenyl)-[4,4'-bipyridine]-1,1'-diium chloride 1,1'-bis(4-cyanophenyl)-[4,4'-bipyridine]-1,1'-diium chloride 31515-20-5 C24H16ClN4+
6-AMino-1-isobutyl-3-Methyl-5-nitroso-2,4-pyriMidinedione 6-AMino-1-isobutyl-3-Methyl-5-nitroso-2,4-pyriMidinedione 54052-67-4 C9H14N4O3
tetrahydro-4-hydroxy-6-isopropyl-5,5-dimethyl-1H-pyrimidin-2-one tetrahydro-4-hydroxy-6-isopropyl-5,5-dimethyl-1H-pyrimidin-2-one 14068-64-5 C9H18N2O2
methyl (S)-2,5-dioxooxazolidine-4-propionate methyl (S)-2,5-dioxooxazolidine-4-propionate 1663-47-4 C7H9NO5
4-[2-(methylthio)ethyl]oxazolidine-2,5-dione 4-[2-(methylthio)ethyl]oxazolidine-2,5-dione 5840-77-7 C6H9NO3S
3-pyrrolidin-1-ylandrosta-3,5-dien-17-one 3-pyrrolidin-1-ylandrosta-3,5-dien-17-one 905-30-6 C23H33NO
3-(trifluoromethyl)-5H,6H,7H,8H-imidazo[1,5-a]pyrazine-1-carboxylic acid hydrochloride 3-(trifluoromethyl)-5H,6H,7H,8H-imidazo[1,5-a]pyrazine-1-carboxylic acid hydrochloride 2172053-56-2 C8H9ClF3N3O2
tetrahydro-1,3-bis(hydroxymethyl)-1H-pyrimidin-2-one tetrahydro-1,3-bis(hydroxymethyl)-1H-pyrimidin-2-one 3270-74-4 C6H12N2O3
4-ethyl-2-methyl-4,5-dihydrothiazole 4-ethyl-2-methyl-4,5-dihydrothiazole 4293-61-2 C6H11NS
[2-(2-methyl-5-nitro-1H-imidazol-1-yl)ethyl] hydrogen succinate [2-(2-methyl-5-nitro-1H-imidazol-1-yl)ethyl] hydrogen succinate 13182-87-1 C10H13N3O6
(S)-2-(Methoxydiphenylmethyl)pyrrolidine (S)-2-(Methoxydiphenylmethyl)pyrrolidine 118971-03-2 C18H21NO
1-(azetidin-3-yl)-4-iodo-1H-pyrazole hydrochloride 1-(azetidin-3-yl)-4-iodo-1H-pyrazole hydrochloride
(S)-4-iodo-1-(pyrrolidin-3-yl)-1H-pyrazole hydrochloride (S)-4-iodo-1-(pyrrolidin-3-yl)-1H-pyrazole hydrochloride 2828444-29-5 C7H11ClIN3
2-Pyridinecarboxamide, 5-[[[(1,1-dimethylethyl)dimethylsilyl]oxy]amino]-1,2,5,6-tetrahydro-4-methyl-, (2S,5R)- 2-Pyridinecarboxamide, 5-[[[(1,1-dimethylethyl)dimethylsilyl]oxy]amino]-1,2,5,6-tetrahydro-4-methyl-, (2S,5R)- 2209874-05-3 C13H27N3O2Si
1-methyl-2-Pyrrolidonium tetrafluoroborate chloride 1-methyl-2-Pyrrolidonium tetrafluoroborate chloride 942068-29-3 C9H13N5
Imidazo[1,2-a]pyrazine, 5,6,7,8-tetrahydro-2-(trifluoromethyl)- (9CI) Imidazo[1,2-a]pyrazine, 5,6,7,8-tetrahydro-2-(trifluoromethyl)- (9CI) 126069-70-3 C7H8F3N3
3-(2-chloropyriMidin-4-yl)-1-Methylindole 3-(2-chloropyriMidin-4-yl)-1-Methylindole 1032452-86-0 C13H10ClN3
MMB-2201 MMB-2201 1616253-26-9 C20H27FN2O3
1,2,4-Triazolylsodium 1,2,4-Triazolylsodium 41253-21-8 C2H4N3Na
4-(4-(Trifluoromethoxy)phenyl)piperidine 4-(4-(Trifluoromethoxy)phenyl)piperidine 180160-91-2 C12H14F3NO
Pyridine,2,2'-(1,3-phenylene)bis- Pyridine,2,2'-(1,3-phenylene)bis- 136538-84-6 C16H12N2
1(tertbutoxycarbonyl)4,4difluoropyrrolidine3carboxylic acid 1(tertbutoxycarbonyl)4,4difluoropyrrolidine3carboxylic acid 1196145-11-5 C10H15F2NO4
2,6-Bis[(4R)-benzyl-2-oxazolin-2-yl]pyridine 2,6-Bis[(4R)-benzyl-2-oxazolin-2-yl]pyridine 365215-38-9 C25H23N3O2
5-BroMo-2-chloro-thiazolo[5,4-b]pyridine 5-BroMo-2-chloro-thiazolo[5,4-b]pyridine 1355241-50-7 C6H2BrClN2S
propan-2-one compound with imidazo[1,2-a]pyridine (1:1) propan-2-one compound with imidazo[1,2-a]pyridine (1:1) 116355-08-9 C10H10N2O
5-AMino-2-chloropyriMidine-4-carboxaMide 5-AMino-2-chloropyriMidine-4-carboxaMide 189747-29-3 C5H5ClN4O
5-METHYL-1,2,4-OXADIAZOL-3-AMINE 5-METHYL-1,2,4-OXADIAZOL-3-AMINE 40483-47-4 C3H5N3O
5-Bromo-1H-benzimidazole 5-Bromo-1H-benzimidazole 4887-88-1 C7H5BrN2
4-(CHLOROMETHYL)-1-TRITYL-1H-IMIDAZOLE 4-(CHLOROMETHYL)-1-TRITYL-1H-IMIDAZOLE 103057-10-9 C23H19ClN2
BTL benzotriazole BTL benzotriazole
Benzotriazole derivative Benzotriazole derivative
3-bromo-1-(oxan-2-yl)-1h-pyrazole 3-bromo-1-(oxan-2-yl)-1h-pyrazole 1044270-96-3 C8H11BrN2O
6-Bromo-8-methyl-imidazo[1,2-a]pyridine-2-carboxylic acid ethyl ester 6-Bromo-8-methyl-imidazo[1,2-a]pyridine-2-carboxylic acid ethyl ester 907945-82-8 C11H11BrN2O2
alpha-Glucosyl Hesperidin alpha-Glucosyl Hesperidin 161713-86-6 C34H44O20
3-[1-(4-Amino-butyl)-1H-[1,2,3]triazol-4-yl]-phenylamine 3-[1-(4-Amino-butyl)-1H-[1,2,3]triazol-4-yl]-phenylamine 1626413-52-2 C12H17N5
5-bromo-4-methylnicotinonitrile 5-bromo-4-methylnicotinonitrile 890092-52-1 C7H5BrN2
3-(4-Pyridine)acrylic acid 3-(4-Pyridine)acrylic acid 84228-93-3 C8H7NO2
1-tert-Butyl-4-iodo-1H-pyrazole 1-tert-Butyl-4-iodo-1H-pyrazole 1354705-41-1 C7H11IN2
1-(azetidin-3-yl)-4-iodo-1H-pyrazole 1-(azetidin-3-yl)-4-iodo-1H-pyrazole 1343072-59-2 C6H8IN3
6-CHLORO-2-PHENYLIMIDAZO[1,2-A]PYRIDINE-3-CARBOXYLIC ACID 6-CHLORO-2-PHENYLIMIDAZO[1,2-A]PYRIDINE-3-CARBOXYLIC ACID 220465-51-0 C14H9ClN2O2
1,3-DIMETHYL-4-NITRO-1H-PYRAZOLE 1,3-DIMETHYL-4-NITRO-1H-PYRAZOLE 3920-38-5 C5H7N3O2
7-BROMO-1H-INDOLE-3-CARBALDEHYDE 7-BROMO-1H-INDOLE-3-CARBALDEHYDE 115666-21-2 C9H6BrNO
6-AZACYTOSINE 6-AZACYTOSINE 931-85-1 C3H4N4O
2-OXO-PYRROLIDINE-3-CARBOXYLIC ACID ETHYL ESTER 2-OXO-PYRROLIDINE-3-CARBOXYLIC ACID ETHYL ESTER 36821-26-8 C7H11NO3
3,5-DIMETHYL-4-NITROISOXAZOLE 3,5-DIMETHYL-4-NITROISOXAZOLE 1123-49-5 C5H6N2O3
Benzyl (2R,4S)-4-amino-2-methylpyrrolidine-1-carboxylate Benzyl (2R,4S)-4-amino-2-methylpyrrolidine-1-carboxylate 2165506-16-9 C13H18N2O2
6'-Bromo-8'-chloro-1',5'-dioxo-1',5'-dihydro-2'H-spiro[cyclohexane-1,3'-imidazo[1,5-a]pyridine]-4-carbonitrile 6'-Bromo-8'-chloro-1',5'-dioxo-1',5'-dihydro-2'H-spiro[cyclohexane-1,3'-imidazo[1,5-a]pyridine]-4-carbonitrile 1849593-46-9 C13H11BrClN3O2
5-[1-(hydroxyimino)ethyl]-4-methylpyrimidin-2-amine 5-[1-(hydroxyimino)ethyl]-4-methylpyrimidin-2-amine 1050886-14-0 C7H10N4O
2-BROMO-4-METHYL-1H-IMIDAZOLE 2-BROMO-4-METHYL-1H-IMIDAZOLE 23328-88-3 C4H5BrN2
1-(3,4,5-Trihydroxypentanoyl)-β-carboline 1-(3,4,5-Trihydroxypentanoyl)-β-carboline 180995-40-8 C16H16N2O4
(6-Methyl-1H-benzimidazol-2-yl)methanol (6-Methyl-1H-benzimidazol-2-yl)methanol 20034-02-0 C9H10N2O
4-(2-bromoethyl)pyridine hydrobromide 4-(2-bromoethyl)pyridine hydrobromide 120277-01-2 C7H9Br2N
1-{[(tert-butoxy)carbonyl]amino}-5-oxopyrrolidine-3-carboxylic acid 1-{[(tert-butoxy)carbonyl]amino}-5-oxopyrrolidine-3-carboxylic acid 1354952-07-0 C10H16N2O5
Terevalefim Terevalefim 1070881-42-3 C9H8N2S
1,3-DIMETHYL-1H-PYRAZOLE-5-CARBONITRILE 1,3-DIMETHYL-1H-PYRAZOLE-5-CARBONITRILE 306936-77-6 C6H7N3
2-{5H,6H,7H,8H,9H-[1,2,4]triazolo[4,3-a]azepin-3-yl}pyrrolidine 2-{5H,6H,7H,8H,9H-[1,2,4]triazolo[4,3-a]azepin-3-yl}pyrrolidine 923690-18-0 C11H18N4
4-chloro-6-(2,2,2-trifluoroethyl)thieno[3,2-d]pyrimidine 4-chloro-6-(2,2,2-trifluoroethyl)thieno[3,2-d]pyrimidine 2102553-51-3 C8H4ClF3N2S
Fluclotizolam Fluclotizolam 54123-15-8 C15H10ClFN4S
4-(4-(cyclopentyloxy)quinolin-2-yl)benzene-1,2-diol 4-(4-(cyclopentyloxy)quinolin-2-yl)benzene-1,2-diol 1353224-53-9 C20H19NO3
4-Pyrimidinamine, 5,6-dichloro-N-methyl- 4-Pyrimidinamine, 5,6-dichloro-N-methyl- 1428252-93-0 C5H5Cl2N3
2-(6-Methoxy-naphthalen-1-yl)-4,4,5,5-tetramethyl-[1,3,2]dioxaborolane 2-(6-Methoxy-naphthalen-1-yl)-4,4,5,5-tetramethyl-[1,3,2]dioxaborolane 588717-94-6 C17H21BO3
(2,5-dioxopyrrolidin-1-yl) (2R)-2-[(2-methylpropan-2-yl)oxycarbonylamino]-5-(phenylmethoxycarbonylamino)pentanoate (2,5-dioxopyrrolidin-1-yl) (2R)-2-[(2-methylpropan-2-yl)oxycarbonylamino]-5-(phenylmethoxycarbonylamino)pentanoate 57225-26-0 C22H29N3O8
Proline, 1-(2-cyanoethyl)- (9CI) Proline, 1-(2-cyanoethyl)- (9CI) 36901-89-0 C8H12N2O2
Carbamic acid, [(3R,4S)-4-fluoro-3-pyrrolidinyl]-, 1,1-dimethylethyl ester, rel- Carbamic acid, [(3R,4S)-4-fluoro-3-pyrrolidinyl]-, 1,1-dimethylethyl ester, rel- 169750-42-9 C9H17FN2O2
1-Octanoylbenzotriazole 1-Octanoylbenzotriazole 58068-80-7 C14H19N3O
2-CHLORO-3-IODO-5-PICOLINE 2-CHLORO-3-IODO-5-PICOLINE 59782-91-1 C6H5ClIN
2,4,6(1H,3H,5H)-Pyrimidinetrione, 5-methyl- (9CI) 2,4,6(1H,3H,5H)-Pyrimidinetrione, 5-methyl- (9CI) 2417-22-3 C5H6N2O3
4-Pyrimidinecarbonitrile, 2-(dimethylamino)- (9CI) 4-Pyrimidinecarbonitrile, 2-(dimethylamino)- (9CI) 79605-00-8 C7H8N4
1H-BENZIMIDAZOL-7-AMINE 1H-BENZIMIDAZOL-7-AMINE 4331-29-7 C7H7N3
1-(tert-butyl) 2-methyl (2S,4R)-4-((4,4''-diamino-5'-(4-aminophenyl)-[1,1':3',1''-terphenyl]-4'-yl)oxy)pyrrolidine-1,2-dicarboxylate 1-(tert-butyl) 2-methyl (2S,4R)-4-((4,4''-diamino-5'-(4-aminophenyl)-[1,1':3',1''-terphenyl]-4'-yl)oxy)pyrrolidine-1,2-dicarboxylate 2116475-69-3 C35H38N4O5
2-chloro-3-methoxy-4-(1-((2-(trimethylsilyl)ethoxy)methyl)-1H-1,2,4-triazol-3-yl)pyridine 2-chloro-3-methoxy-4-(1-((2-(trimethylsilyl)ethoxy)methyl)-1H-1,2,4-triazol-3-yl)pyridine
Fenoxazoline Fenoxazoline
Midodrine hydrochloride Midodrine hydrochloride 3092-17-9 C12H19ClN2O4
P-(2-BENZOXAZOLYL)BENZYL CHLORIDE P-(2-BENZOXAZOLYL)BENZYL CHLORIDE 57864-19-4 C14H10ClNO
6-methyl-1H-indole-2,3-dione 6-methyl-1H-indole-2,3-dione 1128-44-5 C9H7NO2
5-Chloro-2-methoxy-4-methylpyridine 5-Chloro-2-methoxy-4-methylpyridine 851607-29-9 C7H8ClNO
3-IODO-4-METHOXY-PYRIDINE 3-IODO-4-METHOXY-PYRIDINE 89640-55-1 C6H6INO
1H-Benzimidazole,5-chloro-2-propyl-(9CI) 1H-Benzimidazole,5-chloro-2-propyl-(9CI) 4887-91-6 C10H11ClN2
7H-Pyrrolo[1,2-c]imidazol-7-one,5,6-dihydro-(9CI) 7H-Pyrrolo[1,2-c]imidazol-7-one,5,6-dihydro-(9CI) 426219-43-4 C6H6N2O
1H-Benzimidazol-2-amine,5-chloro-6-fluoro-(9CI) 1H-Benzimidazol-2-amine,5-chloro-6-fluoro-(9CI) 142356-64-7 C7H5ClFN3
1H-Imidazole-5-carboxylicacid,1-(1-methylethyl)-(9CI) 1H-Imidazole-5-carboxylicacid,1-(1-methylethyl)-(9CI) 105293-81-0 C7H10N2O2
4-CHLORO-2-PHENYLQUINAZOLINE 4-CHLORO-2-PHENYLQUINAZOLINE 6484-25-9 C14H9ClN2
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