Heterocyclic Compounds

Heterocyclic compounds are a class of compounds that consist of carbon atoms and non-carbon atoms altogether forming a cyclic skeletal structure. These non-carbon atoms are collectively referred to as a heteroatom. The common heteroatoms include nitrogen, oxygen, and sulfur. Lactones, lactams, cyclic ethers that we’ve already learned are heterocyclic compounds. With similar properties of congeneric open-chain compounds, they will be discussed in corresponding chapters. This chapter will mainly discuss heterocyclic compounds with relatively stable ring system and with a certain degree of aromaticity, also known as aromatic heterocyclic compound.

There are many kinds and a large number of heterocyclic compounds widely distributed in nature. Many natural heterocyclic compounds in animals and plants play an important physiological role in the body. For example, heterocyclic structure exists in chlorophyll in plants, hemoglobin in animal blood, alkaloids and glycosides as the active ingredient in herbs, some antibiotics and vitamins, certain composition of amino acids in protein and bases in nucleotide. About half of the existing medicines have heterocyclic structures. Thus, heterocyclic compounds play an important role in organic compounds especially in organic medicines.

The most common and also the most important heterocyclic compounds are that with five-membered or six-membered heterocyclic ring and their fused heterocyclic compounds. Therefore, according to the size of the ring, heterocyclic compounds can be divided into five-membered compounds and six-membered heterocyclic compounds. E.g., furan, thiophene, pyrrole, imidazole, triazole and their fused heterocyclic compounds, indole, benzimidazole and diphenylene-oxide are all five-membered heterocyclic compounds, while pyridine, pyrimidine and their fused heterocyclic compounds, quinoline and quinazoline are all six-membered heterocyclic compounds.

According to the number of hetero atoms, five-membered compounds and six-membered heterocyclic compounds can be divided into one-hetero-atom-containing heterocyclic compounds and two-hetero-atom-containing and several-hetero-atom-containing heterocyclic compounds. E.g., furan, thiophene, pyridine, indole, quinoline, dibenzofuran, etc. are one-hetero-atom-containing heterocyclic compounds; imidazole, pyrimidine, benzimidazole, quinazoline, etc. are two-hetero-atom-containing heterocyclic compounds; purine, comprising more than two hetero atoms, is a several-hetero-atom-containing heterocyclic compound. According to the form of the ring in the molecule, heterocyclic compounds can be divided into single-heterocyclic compounds and fused heterocyclic compounds. E.g., furan, pyridine, pyrimidine, imidazole, etc. are single-heterocyclic compounds and indole, quinoline, dibenzofuran, purines, etc. are fused heterocyclic compounds.

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Structure Chemical Name CAS MF
3-(4-bromophenyl)-N-phenylcarbazole 3-(4-bromophenyl)-N-phenylcarbazole 1028647-93-9 C24H16BrN
3-BROMO-1H-PYRAZOLE 3-BROMO-1H-PYRAZOLE 14521-80-3 C3H3BrN2
1-Amino-2-methylpropan-2-ol 1-Amino-2-methylpropan-2-ol 2854-16-2 C4H11NO
5-bromo-1H-indazole 5-bromo-1H-indazole 53857-57-1 C7H5BrN2
3-Bromo-9H-carbazole 3-Bromo-9H-carbazole 1592-95-6 C12H8BrN
3,3-DIFLUOROPYRROLIDINE HYDROCHLORIDE 3,3-DIFLUOROPYRROLIDINE HYDROCHLORIDE 163457-23-6 C4H7F2N.ClH
6-Bromo-3-nitro-4-quinolinol 6-Bromo-3-nitro-4-quinolinol 853908-50-6 C9H5BrN2O3
(3aR,4S,7R,7aS)  4,7-Methano-1H-isoindole-1,3(2H)-dione (3aR,4S,7R,7aS) 4,7-Methano-1H-isoindole-1,3(2H)-dione 14805-29-9 C9H11NO2
7-Azaindole 7-Azaindole 271-63-6 C7H6N2
2-Piperidone 2-Piperidone 675-20-7 C5H9NO
9-Phenyl-9H-carbazol-3-ylboronic acid 9-Phenyl-9H-carbazol-3-ylboronic acid 854952-58-2 C18H14BNO2
(S)-3-Hydroxypyrrolidine hydrochloride (S)-3-Hydroxypyrrolidine hydrochloride 122536-94-1 C4H10ClNO
THIAZOLIDINE THIAZOLIDINE 504-78-9 C3H7NS
6-Bromoindazole 6-Bromoindazole 79762-54-2 C7H5BrN2
Oxetan-3-ol Oxetan-3-ol 7748-36-9 C3H6O2
4-Chloro-7-azaindole 4-Chloro-7-azaindole 55052-28-3 C7H5ClN2
Cyanuric fluoride Cyanuric fluoride 675-14-9 C3F3N3
3,3'-Dibromo-2,2'-bithiophene 3,3'-Dibromo-2,2'-bithiophene 51751-44-1 C8H4Br2S2
4,4'-Bipyridine 4,4'-Bipyridine 553-26-4 C10H8N2
Isoquinoline Isoquinoline 119-65-3 C9H7N
Coumarin Coumarin 91-64-5 C9H6O2
Fluorene Fluorene 86-73-7 C13H10
Pyrrole Pyrrole 109-97-7 C4H5N
5-Bromoindole 5-Bromoindole 10075-50-0 C8H6BrN
Carbazole Carbazole 86-74-8 C12H9N
Thiophene Thiophene 110-02-1 C4H4S
1-Boc-pyrrolidine-3-carboxylic acid 1-Boc-pyrrolidine-3-carboxylic acid 59378-75-5 C10H17NO4
TEMPO TEMPO 2564-83-2 C9H18NO*
Melamine Melamine 108-78-1 C3H6N6
2,4-dichloro-6-(3,4-difluorophenyl)-1,3,5-triazine 2,4-dichloro-6-(3,4-difluorophenyl)-1,3,5-triazine 1227959-18-3 C9H3Cl2F2N3
2-Bromo-1,3-oxazole hydrochloride 2-Bromo-1,3-oxazole hydrochloride 1305712-69-9 C3H3BrClNO
5-Bromo-8-methylquinoxaline 5-Bromo-8-methylquinoxaline 1360599-43-4 C9H7BrN2
tert-Butyl 4-(4-hydroxypyridin-2-yl)piperazine-1-carboxylate tert-Butyl 4-(4-hydroxypyridin-2-yl)piperazine-1-carboxylate 1453265-70-7 C14H21N3O3
4-(Octadecyloxy)-1,3-benzenediamine 4-(Octadecyloxy)-1,3-benzenediamine 155096-60-9 C24H44N2O
Tris([2,2'-bipyridine]-4,4'-diamine)ruthenium(II)dichloride Tris([2,2'-bipyridine]-4,4'-diamine)ruthenium(II)dichloride C30H30Cl2N12Ru
5-bromo-2-(trifluoromethyl)pyridin-4-amine 5-bromo-2-(trifluoromethyl)pyridin-4-amine 1369921-11-8 C6H4BrF3N2
Chloro{1,3-bis[2,6-bis(1-methylethyl)phenyl]-1,3-dihydro-4,5-dimethyl-2H-imidazol-2-ylidene}gold(I) Chloro{1,3-bis[2,6-bis(1-methylethyl)phenyl]-1,3-dihydro-4,5-dimethyl-2H-imidazol-2-ylidene}gold(I) 1192141-66-4 C29H41AuClN2-
2'-chloro-2,3'-bipyridine 2'-chloro-2,3'-bipyridine 93297-77-9 C10H7ClN2
4,7-Dichloroquinoline 4,7-Dichloroquinoline 86-98-6 C9H5Cl2N
5-Azaindole 5-Azaindole 271-34-1 C7H6N2
2,6-Lutidine 2,6-Lutidine 108-48-5 C7H9N
2,4,6-Collidine 2,4,6-Collidine 108-75-8 C8H11N
Ethyl 3-amino-4-pyrazolecarboxylate Ethyl 3-amino-4-pyrazolecarboxylate 6994-25-8 C6H9N3O2
Thiazole Thiazole 288-47-1 C3H3NS
2-Aminopyridine 2-Aminopyridine 504-29-0 C5H6N2
2-Acetyl-6-methoxynaphthalene 2-Acetyl-6-methoxynaphthalene 3900-45-6 C13H12O2
Indole Indole 120-72-9 C8H7N
(R)-(-)-3-Hydroxytetrahydrofuran (R)-(-)-3-Hydroxytetrahydrofuran 86087-24-3 C4H8O2
1-Boc-3-piperidone 1-Boc-3-piperidone 98977-36-7 C10H17NO3
Furfural Furfural 98-01-1 C5H4O2
Morpholine Morpholine 110-91-8 C4H9NO
3-Quinuclidinol 3-Quinuclidinol 1619-34-7 C7H13NO
Cyanuric chloride Cyanuric chloride 108-77-0 C3Cl3N3
Furan Furan 110-00-9 C4H4O
Pyrimidine, 4,6-dichloro-2-[(1E)-2-phenylethenyl]- Pyrimidine, 4,6-dichloro-2-[(1E)-2-phenylethenyl]- 934353-78-3 C12H8Cl2N2
tetrakis(imidazol-1-ylmethyl)methane tetrakis(imidazol-1-ylmethyl)methane 860026-77-3 C17H20N8
2-iodo-1-p-tolyl-propan-1-one 2-iodo-1-p-tolyl-propan-1-one 236117-38-7 C10H11IO
5-Iodo-1-methyl-1H-pyrazole-4-carbaldehyde 5-Iodo-1-methyl-1H-pyrazole-4-carbaldehyde 1346818-72-1 C5H5IN2O
(2-isobutylpyridin-4-yl)boronic acid (2-isobutylpyridin-4-yl)boronic acid 2225177-31-9 C9H14BNO2
1-phenyl-N-(2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridin-4-yl)methanimine 1-phenyl-N-(2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridin-4-yl)methanimine 2223056-41-3 C18H21BN2O2
2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-4-(4-(trifluoromethyl)phenyl)pyridine 2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-4-(4-(trifluoromethyl)phenyl)pyridine 2223027-45-8 C18H19BF3NO2
2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-4-(thiophen-3-yl)pyridine 2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-4-(thiophen-3-yl)pyridine 1402240-63-4 C15H18BNO2S
2-(furan-2-yl)-6-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 2-(furan-2-yl)-6-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 2223027-60-7 C15H18BNO3
2-(tetrahydro-2H-pyran-3-yl)-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 2-(tetrahydro-2H-pyran-3-yl)-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 2223004-04-2 C16H24BNO3
2-propyl-6-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 2-propyl-6-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 2223027-66-3 C14H22BNO2
3-(tetrahydro-2H-pyran-3-yl)-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 3-(tetrahydro-2H-pyran-3-yl)-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 2223004-21-3 C16H24BNO3
4-(3,5-difluorophenyl)-2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 4-(3,5-difluorophenyl)-2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 2223037-47-4 C17H18BF2NO2
4-(3-methylpiperidin-1-yl)-2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 4-(3-methylpiperidin-1-yl)-2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 1352297-98-3 C17H27BN2O2
4-(pyrrolidin-1-yl)-2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 4-(pyrrolidin-1-yl)-2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 2223052-75-1 C15H23BN2O2
4-(tetrahydrofuran-3-yl)-2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 4-(tetrahydrofuran-3-yl)-2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 2222997-25-1 C15H22BNO3
4-propyl-2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 4-propyl-2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 2223053-70-9 C14H22BNO2
5-(2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridin-4-yl)pyrimidine 5-(2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridin-4-yl)pyrimidine 2223012-54-0 C15H18BN3O2
5-(cyclopentyloxy)-2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 5-(cyclopentyloxy)-2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 2223029-33-0 C16H24BNO3
5-phenyl-2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 5-phenyl-2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 1946760-47-9 C17H20BNO2
6-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-2,4'-bipyridine 6-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-2,4'-bipyridine 1417334-06-5 C16H19BN2O2
N-ethyl-N-methyl-6-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridin-3-amine N-ethyl-N-methyl-6-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridin-3-amine 2223006-98-0 C14H23BN2O2
tert-butyl 2-(5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridin-2-yl)morpholine-4-carboxylate tert-butyl 2-(5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridin-2-yl)morpholine-4-carboxylate 2222996-46-3 C20H31BN2O5
tert-butyl 3-(6-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridin-2-yl)pyrrolidine-1-carboxylate tert-butyl 3-(6-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridin-2-yl)pyrrolidine-1-carboxylate 2223006-54-8 C20H31BN2O4
tert-butyl 4-(4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridin-2-yl)piperidine-1-carboxylate tert-butyl 4-(4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridin-2-yl)piperidine-1-carboxylate 2223028-82-6 C21H33BN2O4
TERT-BUTYL 2-(5-BROMOPYRIDIN-3-YL)MORPHOLINE-4-CARBOXYLATE TERT-BUTYL 2-(5-BROMOPYRIDIN-3-YL)MORPHOLINE-4-CARBOXYLATE 1427501-55-0 C14H19BrN2O3
6-(3-chlorophenyl)-2-cyclopropylpyrimidin-4-ol 6-(3-chlorophenyl)-2-cyclopropylpyrimidin-4-ol 1412953-15-1 C13H11ClN2O
5-Pyrrolidin-2-yl-pyridin-2-ylamine 5-Pyrrolidin-2-yl-pyridin-2-ylamine 1026915-22-9 C9H13N3
4,4,5,5-TETRAMETHYL-2-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRONAPHTHALEN-2-YL)-1,3,2-DIOXABOROLANE(WXG00895) 4,4,5,5-TETRAMETHYL-2-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRONAPHTHALEN-2-YL)-1,3,2-DIOXABOROLANE(WXG00895) 853998-14-8 C20H31BO2
5-bromo-N,N,4-trimethylpyrimidin-2-amine 5-bromo-N,N,4-trimethylpyrimidin-2-amine 1368039-53-5 C7H10BrN3
5-bromo-2-(oxolan-3-yl)-1,3-thiazole 5-bromo-2-(oxolan-3-yl)-1,3-thiazole 1159815-19-6 C7H8BrNOS
5-bromo-2-(3-methylpiperidin-1-yl)pyrimidine 5-bromo-2-(3-methylpiperidin-1-yl)pyrimidine 1289111-78-9 C10H14BrN3
4-sec-butylpyridin-3-amine 4-sec-butylpyridin-3-amine 1481304-60-2 C9H14N2
4-Bromo-2-(n-propoxy)thiazole 4-Bromo-2-(n-propoxy)thiazole 1289081-81-7 C6H8BrNOS
4-Chloro-[3,4]bipyridinyl-2-ylamine 4-Chloro-[3,4]bipyridinyl-2-ylamine 1381938-46-0 C10H8ClN3
3-bromo-2-((tetrahydrofuran-3-yl)oxy)pyridine 3-bromo-2-((tetrahydrofuran-3-yl)oxy)pyridine 1289111-03-0 C9H10BrNO2
2-chloro-4-methyl-6-(pyrrolidin-1-yl)pyrimidine 2-chloro-4-methyl-6-(pyrrolidin-1-yl)pyrimidine 425425-25-8 C9H12ClN3
3-Benzyl-5-phenyl-3H-imidazol-4-ylamine 3-Benzyl-5-phenyl-3H-imidazol-4-ylamine 1000932-31-9 C16H15N3
2-Cyclohexylthiazol-4-amine 2-Cyclohexylthiazol-4-amine 1159815-76-5 C9H14N2S
4-CYANOPYRAZOLE 4-CYANOPYRAZOLE 31108-57-3 C4H3N3
1-Benzyl-1-methyl-4-oxopiperidinium iodide 1-Benzyl-1-methyl-4-oxopiperidinium iodide 77542-27-9 C13H18INO
1-tert-Butyl 6-ethyl 2,3-dihydro-1H-imidazo[1,2-b]pyrazole-1,6-dicarboxylate 1-tert-Butyl 6-ethyl 2,3-dihydro-1H-imidazo[1,2-b]pyrazole-1,6-dicarboxylate 1820647-54-8 C13H19N3O4
4,6-DICHLORONICOTINONITRILE 4,6-DICHLORONICOTINONITRILE 166526-03-0 C6H2Cl2N2
1-[2-(3,4-Dimethoxy-phenyl)-ethyl]-pyrimidine-2,4,6-trione 1-[2-(3,4-Dimethoxy-phenyl)-ethyl]-pyrimidine-2,4,6-trione 75535-95-4 C14H16N2O5
4-Methyl-1,2,4-triazole-3-thiol 4-Methyl-1,2,4-triazole-3-thiol 24854-43-1 C3H5N3S
1-(3-Amino-pyridin-4-yl)-pyrrolidin-3-ol 1-(3-Amino-pyridin-4-yl)-pyrrolidin-3-ol 1343207-41-9 C9H13N3O
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